PhD Research — University of Copenhagen, 2022–2026
Stress resilience and behavioral recovery in larval zebrafish
This thesis investigates how individual larval zebrafish differ in their capacity to recover behaviorally from acute stress, and what neural substrates underlie that variation. The work combines standardized behavioral assays, whole-brain activity mapping via pERK/tERK immunohistochemistry, multivariate statistics, and network-level analysis.
Research overview
Stress is a universal experience, but recovery from it is not. Some individuals bounce back quickly while others show prolonged disruption. Understanding the biological basis of this variability is important for both basic neuroscience and for informing how we think about resilience in broader biomedical contexts.
Using larval zebrafish as a model, this work developed a behavioral framework for quantifying stress resilience as the rate and extent of locomotor recovery after acute osmotic stress. The transparency of the larval zebrafish brain then allowed whole-brain neural activity to be mapped and linked to individual differences in behavioral rebound.
Key contributions
- A standardized stress assay and resilience scoring framework based on locomotor rebound dynamics
- Characterization of inter-individual variability in stress recovery at the behavioral level
- Whole-brain activity mapping using pERK/tERK ratios, atlas registration, and region-level quantification
- Identification of neural correlates of resilience variation through multivariate and network-based analysis
- Reproducible Python pipelines for behavioral feature extraction, brain image analysis, and statistical modeling
Methods
The experimental pipeline included high-throughput behavioral tracking, acute stress protocols, immunohistochemistry for neural activity markers, confocal imaging, atlas-based brain registration, and computational analysis spanning dimensionality reduction, permutation testing, functional connectivity, and graph-theoretic metrics.
Thesis chapters
- Introduction
- The zebrafish stress response
- Quantifying stress resilience as locomotor rebound
- Neural correlates of inter-individual variability in stress recovery
- Network-level analysis of brain-wide activity
- Discussion and perspectives
The thesis was supervised by Florence Kermen at the Department of Neuroscience, University of Copenhagen. The manuscripts arising from this work are currently in preparation.